Most of our research is into how the brain balances its energy supply with demand – and how variations in this balance affect brain function.

Specifically, we want to learn which vascular cells control the brain’s energy supply, and how much neurovascular coupling between energy supply (blood flow) and demand (neuronal activity) varies physiologically and during disease states. For example, we are investigating whether neurovascular function changes during different arousal states, or in conditions such as Alzheimer’s disease and obesity. To do this, we image blood vessels in brain slices and in vivo, in behaving mice, while manipulating neuronal activity pharmacologically or using physiological stimuli, and imaging neuronal activity using genetically encoded calcium indicators. Our results will be important for understanding how brain activity is fuelled and how the brain’s energy supply is affected by disease. Because human functional magnetic resonance imaging (fMRI) measures blood flow as a surrogate of neuronal activity, our results will also be important for understanding what fMRI signals actually tell us about neuronal activity.

In our lab, we use several imaging techniques to probe neurovascular function. Left: Investigating inflammation and the vasculature: Confocal image of a live hippocampal brain slice, with blood vessels and microglia labelled with IB4 (cyan) and astrocytes labelled with SR101 (red). Right: Investigating vascular mural cell anatomy: Confocal image of a fixed slice of cortex from mice expressing the fluorescent protein DsRed in vascular mural cells.


Brain blood vessels can be imaged in behaving mice, by intravenously injecting a fluorescent dye and imaging the brain with a 2-photon microscope (red in movie above). We can also see what the neurons are doing, by labelling them with a fluorescent calcium indicator (GCaMP6f; green). As the mouse runs on a wheel, and watches visual stimuli, neurons are activated and blood vessels dilate.  You can see by eye the large vessel in the centre dilate, but when we take higher resolution movies of the smaller capillaries, we can also see them dilate.



Investigating neurovascular coupling in hippocampus compared to visual cortex

Kira Shaw, Postdoc

The brain needs energy to fuel its activity. Active neurons produce “neurovascular coupling” signals, which diffuse to blood vessels to increase blood flow, and supply oxygen and glucose. The undersupply of oxygen and glucose to the brain is associated with neuronal damage (e.g. Alzheimer’s disease). Neurovascular coupling has been widely studied in primary sensory cortices in vivo, but less so in hippocampus. Evidence has suggested that neuronal activity can occur without a positive BOLD signal in hippocampus 1,2, and that this region is uniquely more vulnerable to hypoxia 3. Why and when such “neurovascular uncoupling” occurs in the hippocampus is unclear.

I use two-photon imaging to visualise blood vessels and excitatory neurons (A) in the dorsal hippocampus in vivo from awake mice traversing a virtual reality environment (B). Image A shows the pyramidal cell layer (stratum pyramidale) of CA1, with active excitatory neurons labelled in green (GCaMP6f) and blood vessels in fluorescent red (Texas red dextran). Using these techniques I am able to measure neuronal firing rates and response profiles, relative to blood flow and vessel diameter changes.

1 – Mishra et al. J. Neurosci. 31, 15053-64, (2011).
2 – Angenstein et al. J. Neurosci. 29, 2428-39, (2009).
3 - Cervos-Navarro & Diemer. Crit Re Neurobiol. 6, 149-82, (1991).

Investigating the effect of Apolipoprotein ε4 on neurovascular function

Orla Bonnar, PhD student

In my PhD I investigate the effect of the apolipoprotein e4 (APOE4) gene on the ability of the brain to regulate its blood supply, and how this effect is modulated by age. I aim to elucidate the interaction between the APOE4 genotype and neurovascular coupling in the cortex and hippocampus by using two-photon microscopy to image both the vasculature and neuronal activity in awake, behaving mice that have the human APOE4 gene inserted.

A z stack of FITC-dextran filled blood vessels in the cortex

Hippocampal encoding of a virtual environment

Dorieke Grijseels, PhD student

The hippocampus is a brain area that is important for spatial navigation and spatial memory. It contains excitatory pyramidal cells that fire at a specific place in the environment, aptly named ‘place cells’. Although place cells are relatively stable within the same environment, they remap when part of the environment is changed. This might be a chance in local cues, e.g. objects added or removed, or to the context, e.g. a different scent is introduced. Not all place cells remap in the same way, some cells might start firing in a different location, others might stop firing alltogether.

By combining two-photon imaging and presentation of a virtual environment, I am able to very precisely determine the individual response of cells to small changes to the environment. I will try to use this to determine the encoding of individual aspects of the environment and look at the functional heterogeneity of the place cells population.

a. Overview of pyramidal cells in the hippocampus. b. Close up of pyramidal cells in the hippocampus

The effect of APOE genotype and exercise on neurovascular coupling in health and disease

Silvia Anderle, PhD student

APOE4 is the most common genetic risk factor for the development of late onset Alzheimer’s disease. I provide homozygous mice of APOE4 or APOE3 genotype with an exercise wheel that they are free to use in their home cages, whereas other mice of same genotype don’t have access to exercise. I can record and analyse the level of activity of the mice using a camera system and softwares that provide me with a reading of the distance travelled. I then visualise their blood vessels and neurons using two-photon microscopy and an optical probe that detects hemodynamic values of the region of interest. The collected data is analysed and compared between mice of different genotype and activity status.

In the second part of my PhD,  I will use a mouse model of Alzheimer’s disease that carries human APOE genes. I will look at how plaque accumulation, a hallmark of the disease, changes between APOE genotypes and the role of exercise on the development and the progression of the disease.


Do monoamines affect neurovascular coupling?

Katie Boyd, PhD student

My project will test whether transmitters such as noradrenaline and dopamine alter the relationship between neuronal activity and vascular responses. To explore this, I image blood vessels in brain slices, and apply drugs to change blood vessel diameters. I also measure neuronal and blood vessel responses in vivo, in conditions where monoamine release varies.

 In this image, a capillary is constricting in response to applied noradrenaline and dilating in response to glutamate.

Investigating the detrimental effects of a short-term high fat diet

Devin Clarke, PhD student

Obesity is rising rapidly in the western world thanks in part to the abundance of foods that are high in energy and fats. A remarkable aspect of these high energy, high fat diets, is that in animal models they induce not only inflammation in the brain, but also changes in neuronal activity and animal behavior as little as 48-72 hours after beginning the diet. I am interested in detailing, and eventually manipulating, the neuroimmune and neurovascular effects of short term high fat diet feeding. The techniques I use to do this are immunostaining of brain tissue and 2-photon microscopy in awake mice, that have fluorescently labeled blood vessels, pericytes, and microglia, among others.